demuxEM for cell-hashing/nucleus-hashing data analysis

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demuxEM is a module on analyzing cell-hashing/nucleus-hashing data. It’s used by Cumulus in demultiplexing step.

Version 0.1.8 May 22, 2025

Support HTO count matrix input in hdf5 format.

Version 0.1.7 October 05, 2021

Filter cell barcodes with 0 hashtag counts in estimate_background_probs

Version 0.1.6 May 28, 2021

Fix the bug when the input multi-modal object contains non-RNA modality data.

Version 0.1.5 September 16, 2020

Add barplot showing percentage of RNA barcodes with HTO counts.

Version 0.1.4 July 15, 2020

Adapt to pegasusio 0.2.5.

Version 0.1.1 April 9, 2020

Adapt to pegasusio 0.1.3.

Version 0.1.0 April 8, 2020

Initial release under new name demuxEM.